Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Cape Verde Northwestern Islands 1  9  B, C  9D 62
 2  Cape Verde Southeastern Islands 1  9  B, C  9D 62
 3  England North West 1  9  B, C  9D 0.6800298
 4  Ghana Ga-Adangbe 1  9  B, C  9D 0.3000131
 5  Guinea Bissau 1  9  B, C  9D 65
 6  Ireland Northern 1  9  B, C  9D 0.69001,000
 7  Ireland South 1  9  B, C  9D 0.7900250
 8  Mexico City Mestizo pop 2 2  9  B, C  9D 0.5400234
 9  Mexico Oaxaca Mixe 2  9  B, C  9D 0.470055
 10  Mexico Oaxaca Mixtec 2  9  B, C  9D 0.5500103
 11  Philippines Ivatan 2  9  B, C  9D 0.410050
 12  Poland DKMS 2  9  B, C  9D 0.650020,653
 13  Azores Central Islands 1  9  B, C  9D 56
 14  Azores Oriental Islands 1  9  B, C  9D 39
 15  Madeira 1  9  B, C  9D 185
 16  Portugal Center 1  9  B, C  9D 50
 17  Portugal North 1  9  B, C  9D 46
 18  Portugal South 1  9  B, C  9D 49
 19  Sao Tome Island Angolar 1  9  B, C  9D 12
 20  Sao Tome Island Forro 1  9  B, C  9D 50
 21  Saudi Arabia pop 5 1  9  B, C  9D 0.6300158
 22  Taiwan Bunun 2  9  B, C  9D 0.3300101
 23  Taiwan Rukai 2  9  B, C  9D 0.290050
 24  Taiwan Ami 2  9  B, C  9D 0.190098
 25  Taiwan Puyuma 2  9  B, C  9D 0.170050
 26  Taiwan Tao 2  9  B, C  9D 0.210050
 27  Taiwan Thao 2  9  B, C  9D 0.280030
 28  USA African American pop 4 2  9  B, C  9D 0.57002,411
 29  USA African American pop 4 2  9  B, C  9D 0.56002,411
 30  USA Asian pop 2 2  9  B, C  9D 0.45001,772
 31  USA Asian pop 2 2  9  B, C  9D 0.46001,772
 32  USA Hispanic pop 2 2  9  B, C  9D 0.51001,999
 33  USA Hispanic pop 2 2  9  B, C  9D 0.50001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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