Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Azores Central Islands 1  76, 77, 79, 80, 81, 82, 83  C  80K 56
 2  Azores Oriental Islands 1  76, 77, 79, 80, 81, 82, 83  C  80K 39
 3  Cape Verde Northwestern Islands 1  76, 77, 79, 80, 81, 82, 83  C  80K 62
 4  Cape Verde Southeastern Islands 1  76, 77, 79, 80, 81, 82, 83  C  80K 62
 5  England North West 1  76, 77, 79, 80, 81, 82, 83  C  80K 0.5400298
 6  Ghana Ga-Adangbe 1  76, 77, 79, 80, 81, 82, 83  C  80K 0.8200131
 7  Guinea Bissau 1  76, 77, 79, 80, 81, 82, 83  C  80K 65
 8  Ireland Northern 1  76, 77, 79, 80, 81, 82, 83  C  80K 0.55001,000
 9  Ireland South 1  76, 77, 79, 80, 81, 82, 83  C  80K 0.5700250
 10  Madeira 1  76, 77, 79, 80, 81, 82, 83  C  80K 185
 11  Mexico City Mestizo pop 2 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.5600234
 12  Mexico Oaxaca Mixe 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.660055
 13  Mexico Oaxaca Mixtec 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.5000103
 14  Philippines Ivatan 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.470050
 15  Poland DKMS 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.650020,653
 16  Portugal Center 1  76, 77, 79, 80, 81, 82, 83  C  80K 50
 17  Portugal North 1  76, 77, 79, 80, 81, 82, 83  C  80K 46
 18  Portugal South 1  76, 77, 79, 80, 81, 82, 83  C  80K 49
 19  Sao Tome Island Angolar 1  76, 77, 79, 80, 81, 82, 83  C  80K 12
 20  Sao Tome Island Forro 1  76, 77, 79, 80, 81, 82, 83  C  80K 50
 21  Saudi Arabia pop 5 1  76, 77, 79, 80, 81, 82, 83  C  80K 0.7500158
 22  Taiwan Ami 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.410098
 23  Taiwan Bunun 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.4000101
 24  Taiwan Puyuma 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.260050
 25  Taiwan Puyuma 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.280050
 26  Taiwan Rukai 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.190050
 27  Taiwan Tao 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.650050
 28  Taiwan Thao 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.330030
 29  USA African American pop 4 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.76002,411
 30  USA African American pop 4 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.77002,411
 31  USA Asian pop 2 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.43001,772
 32  USA Asian pop 2 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.44001,772
 33  USA Hispanic pop 2 2  76, 77, 79, 80, 81, 82, 83  C  80K 0.63001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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