Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Azores Central Islands 1  79, 80, 81, 82, 83  A, B  80I 0.700056
 2  Azores Oriental Islands 1  79, 80, 81, 82, 83  A, B  80I 0.720039
 3  Cape Verde Northwestern Islands 1  79, 80, 81, 82, 83  A, B  80I 0.740062
 4  Cape Verde Southeastern Islands 1  79, 80, 81, 82, 83  A, B  80I 0.740062
 5  England North West 1  79, 80, 81, 82, 83  A, B  80I 0.4600298
 6  Ghana Ga-Adangbe 1  79, 80, 81, 82, 83  A, B  80I 0.7400131
 7  Guinea Bissau 1  79, 80, 81, 82, 83  A, B  80I 0.660065
 8  Ireland Northern 1  79, 80, 81, 82, 83  A, B  80I 0.37001,000
 9  Ireland South 1  79, 80, 81, 82, 83  A, B  80I 0.4200250
 10  Madeira 1  79, 80, 81, 82, 83  A, B  80I 0.7100185
 11  Mexico City Mestizo pop 2 2  79, 80, 81, 82, 83  A, B  80I 234
 12  Mexico Oaxaca Mixe 2  79, 80, 81, 82, 83  A, B  80I 55
 13  Mexico Oaxaca Mixtec 2  79, 80, 81, 82, 83  A, B  80I 103
 14  Philippines Ivatan 2  79, 80, 81, 82, 83  A, B  80I 50
 15  Poland DKMS 2  79, 80, 81, 82, 83  A, B  80I 0.580020,653
 16  Portugal Center 1  79, 80, 81, 82, 83  A, B  80I 0.520050
 17  Portugal North 1  79, 80, 81, 82, 83  A, B  80I 0.670046
 18  Portugal South 1  79, 80, 81, 82, 83  A, B  80I 0.610049
 19  Sao Tome Island Angolar 1  79, 80, 81, 82, 83  A, B  80I 0.920012
 20  Sao Tome Island Forro 1  79, 80, 81, 82, 83  A, B  80I 0.900050
 21  Saudi Arabia pop 5 1  79, 80, 81, 82, 83  A, B  80I 0.7800158
 22  Taiwan Ami 2  79, 80, 81, 82, 83  A, B  80I 98
 23  Taiwan Bunun 2  79, 80, 81, 82, 83  A, B  80I 101
 24  Taiwan Puyuma 2  79, 80, 81, 82, 83  A, B  80I 0.870050
 25  Taiwan Rukai 2  79, 80, 81, 82, 83  A, B  80I 0.940050
 26  Taiwan Tao 2  79, 80, 81, 82, 83  A, B  80I 0.830050
 27  Taiwan Thao 2  79, 80, 81, 82, 83  A, B  80I 0.880030
 28  USA African American pop 4 2  79, 80, 81, 82, 83  A, B  80I 0.68002,411
 29  USA African American pop 4 2  79, 80, 81, 82, 83  A, B  80I 0.69002,411
 30  USA Asian pop 2 2  79, 80, 81, 82, 83  A, B  80I 0.62001,772
 31  USA Asian pop 2 2  79, 80, 81, 82, 83  A, B  80I 0.63001,772
 32  USA Hispanic pop 2 2  79, 80, 81, 82, 83  A, B  80I 0.62001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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