Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)
Sample
Size
Distribution*
 1  Azores Central Islands 1  76, 77, 79, 80  A, B  76ESI 0.110056
 2  Azores Oriental Islands 1  76, 77, 79, 80  A, B  76ESI 0.100039
 3  Cape Verde Northwestern Islands 1  76, 77, 79, 80  A, B  76ESI 0.100062
 4  Cape Verde Southeastern Islands 1  76, 77, 79, 80  A, B  76ESI 0.080062
 5  England North West 1  76, 77, 79, 80  A, B  76ESI 0.1000298
 6  Ghana Ga-Adangbe 1  76, 77, 79, 80  A, B  76ESI 0.0000131
 7  Guinea Bissau 1  76, 77, 79, 80  A, B  76ESI 0.080065
 8  Ireland Northern 1  76, 77, 79, 80  A, B  76ESI 0.10001,000
 9  Ireland South 1  76, 77, 79, 80  A, B  76ESI 0.1500250
 10  Madeira 1  76, 77, 79, 80  A, B  76ESI 0.1100185
 11  Mexico City Mestizo pop 2 2  76, 77, 79, 80  A, B  76ESI 234
 12  Mexico Oaxaca Mixe 2  76, 77, 79, 80  A, B  76ESI 55
 13  Mexico Oaxaca Mixtec 2  76, 77, 79, 80  A, B  76ESI 103
 14  Philippines Ivatan 2  76, 77, 79, 80  A, B  76ESI 50
 15  Poland DKMS 2  76, 77, 79, 80  A, B  76ESI 0.150020,653
 16  Portugal Center 1  76, 77, 79, 80  A, B  76ESI 0.080050
 17  Portugal North 1  76, 77, 79, 80  A, B  76ESI 0.130046
 18  Portugal South 1  76, 77, 79, 80  A, B  76ESI 0.060049
 19  Sao Tome Island Angolar 1  76, 77, 79, 80  A, B  76ESI 0.000012
 20  Sao Tome Island Forro 1  76, 77, 79, 80  A, B  76ESI 0.040050
 21  Saudi Arabia pop 5 1  76, 77, 79, 80  A, B  76ESI 0.0300158
 22  Taiwan Ami 2  76, 77, 79, 80  A, B  76ESI 98
 23  Taiwan Bunun 2  76, 77, 79, 80  A, B  76ESI 101
 24  Taiwan Puyuma 2  76, 77, 79, 80  A, B  76ESI 0.000050
 25  Taiwan Rukai 2  76, 77, 79, 80  A, B  76ESI 0.000050
 26  Taiwan Tao 2  76, 77, 79, 80  A, B  76ESI 0.000050
 27  Taiwan Thao 2  76, 77, 79, 80  A, B  76ESI 0.000030
 28  USA African American pop 4 2  76, 77, 79, 80  A, B  76ESI 0.04002,411
 29  USA Asian pop 2 2  76, 77, 79, 80  A, B  76ESI 0.03001,772
 30  USA Hispanic pop 2 2  76, 77, 79, 80  A, B  76ESI 0.09001,999
 31  USA Hispanic pop 2 2  76, 77, 79, 80  A, B  76ESI 0.07001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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