Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Azores Central Islands 1  66, 67  B  66IC 0.300056
 2  Azores Oriental Islands 1  66, 67  B  66IC 0.310039
 3  Cape Verde Northwestern Islands 1  66, 67  B  66IC 0.160062
 4  Cape Verde Southeastern Islands 1  66, 67  B  66IC 0.290062
 5  England North West 1  66, 67  B  66IC 0.1800298
 6  Ghana Ga-Adangbe 1  66, 67  B  66IC 0.2000131
 7  Guinea Bissau 1  66, 67  B  66IC 0.120065
 8  Ireland Northern 1  66, 67  B  66IC 0.22001,000
 9  Ireland South 1  66, 67  B  66IC 0.2300250
 10  Madeira 1  66, 67  B  66IC 0.2800185
 11  Mexico City Mestizo pop 2 2  66, 67  B  66IC 0.4000234
 12  Mexico Oaxaca Mixe 2  66, 67  B  66IC 0.080055
 13  Mexico Oaxaca Mixtec 2  66, 67  B  66IC 0.5500103
 14  Philippines Ivatan 2  66, 67  B  66IC 0.210050
 15  Poland DKMS 2  66, 67  B  66IC 0.260020,653
 16  Portugal Center 1  66, 67  B  66IC 0.140050
 17  Portugal North 1  66, 67  B  66IC 0.280046
 18  Portugal South 1  66, 67  B  66IC 0.160049
 19  Sao Tome Island Angolar 1  66, 67  B  66IC 0.080012
 20  Sao Tome Island Forro 1  66, 67  B  66IC 0.160050
 21  Saudi Arabia pop 5 1  66, 67  B  66IC 0.0900158
 22  Taiwan Ami 2  66, 67  B  66IC 0.210098
 23  Taiwan Bunun 2  66, 67  B  66IC 0.2800101
 24  Taiwan Puyuma 2  66, 67  B  66IC 0.280050
 25  Taiwan Rukai 2  66, 67  B  66IC 0.240050
 26  Taiwan Tao 2  66, 67  B  66IC 0.260050
 27  Taiwan Thao 2  66, 67  B  66IC 0.250030
 28  USA African American pop 4 2  66, 67  B  66IC 0.16002,411
 29  USA Asian pop 2 2  66, 67  B  66IC 0.19001,772
 30  USA Asian pop 2 2  66, 67  B  66IC 0.18001,772
 31  USA Hispanic pop 2 2  66, 67  B  66IC 0.28001,999
 32  USA Hispanic pop 2 2  66, 67  B  66IC 0.29001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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