Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Cape Verde Northwestern Islands 1  65, 66, 69  A  65RK 0.290062
 2  Cape Verde Southeastern Islands 1  65, 66, 69  A  65RK 0.320062
 3  England North West 1  65, 66, 69  A  65RK 0.5300298
 4  Ghana Ga-Adangbe 1  65, 66, 69  A  65RK 0.3200131
 5  Guinea Bissau 1  65, 66, 69  A  65RK 0.380065
 6  Ireland Northern 1  65, 66, 69  A  65RK 0.49001,000
 7  Ireland South 1  65, 66, 69  A  65RK 0.4400250
 8  Mexico Oaxaca Mixtec 2  65, 66, 69  A  65RK 103
 9  Mexico Oaxaca Mixe 2  65, 66, 69  A  65RK 55
 10  Mexico City Mestizo pop 2 2  65, 66, 69  A  65RK 234
 11  Philippines Ivatan 2  65, 66, 69  A  65RK 0.720050
 12  Poland DKMS 2  65, 66, 69  A  65RK 0.510020,653
 13  Azores Central Islands 1  65, 66, 69  A  65RK 0.480056
 14  Azores Oriental Islands 1  65, 66, 69  A  65RK 0.510039
 15  Madeira 1  65, 66, 69  A  65RK 0.4900185
 16  Portugal Center 1  65, 66, 69  A  65RK 0.480050
 17  Portugal North 1  65, 66, 69  A  65RK 0.590046
 18  Portugal South 1  65, 66, 69  A  65RK 0.450049
 19  Sao Tome Island Angolar 1  65, 66, 69  A  65RK 0.250012
 20  Sao Tome Island Forro 1  65, 66, 69  A  65RK 0.360050
 21  Saudi Arabia pop 5 1  65, 66, 69  A  65RK 0.4100158
 22  Taiwan Rukai 2  65, 66, 69  A  65RK 0.120050
 23  Taiwan Puyuma 2  65, 66, 69  A  65RK 0.420050
 24  Taiwan Tao 2  65, 66, 69  A  65RK 0.040050
 25  Taiwan Thao 2  65, 66, 69  A  65RK 0.220030
 26  Taiwan Bunun 2  65, 66, 69  A  65RK 101
 27  Taiwan Ami 2  65, 66, 69  A  65RK 98
 28  USA African American pop 4 2  65, 66, 69  A  65RK 0.34002,411
 29  USA Asian pop 2 2  65, 66, 69  A  65RK 0.44001,772
 30  USA Hispanic pop 2 2  65, 66, 69  A  65RK 0.46001,999
 31  USA Hispanic pop 2 2  65, 66, 69  A  65RK 0.47001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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