Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)
Sample
Size
Distribution*
 1  Azores Central Islands 1  62, 63, 65  A, B  62GE 0.540056
 2  Azores Oriental Islands 1  62, 63, 65  A, B  62GE 0.510039
 3  Cape Verde Northwestern Islands 1  62, 63, 65  A, B  62GE 0.480062
 4  Cape Verde Southeastern Islands 1  62, 63, 65  A, B  62GE 0.440062
 5  England North West 1  62, 63, 65  A, B  62GE 0.5700298
 6  Ghana Ga-Adangbe 1  62, 63, 65  A, B  62GE 0.4400131
 7  Guinea Bissau 1  62, 63, 65  A, B  62GE 0.480065
 8  Ireland Northern 1  62, 63, 65  A, B  62GE 0.54001,000
 9  Ireland South 1  62, 63, 65  A, B  62GE 0.5100250
 10  Madeira 1  62, 63, 65  A, B  62GE 0.5400185
 11  Mexico City Mestizo pop 2 2  62, 63, 65  A, B  62GE 234
 12  Mexico Oaxaca Mixe 2  62, 63, 65  A, B  62GE 55
 13  Mexico Oaxaca Mixtec 2  62, 63, 65  A, B  62GE 103
 14  Philippines Ivatan 2  62, 63, 65  A, B  62GE 50
 15  Poland DKMS 2  62, 63, 65  A, B  62GE 0.540020,653
 16  Portugal Center 1  62, 63, 65  A, B  62GE 0.580050
 17  Portugal North 1  62, 63, 65  A, B  62GE 0.590046
 18  Portugal South 1  62, 63, 65  A, B  62GE 0.510049
 19  Sao Tome Island Angolar 1  62, 63, 65  A, B  62GE 0.420012
 20  Sao Tome Island Forro 1  62, 63, 65  A, B  62GE 0.440050
 21  Saudi Arabia pop 5 1  62, 63, 65  A, B  62GE 0.4300158
 22  Taiwan Ami 2  62, 63, 65  A, B  62GE 98
 23  Taiwan Bunun 2  62, 63, 65  A, B  62GE 101
 24  Taiwan Puyuma 2  62, 63, 65  A, B  62GE 0.360050
 25  Taiwan Rukai 2  62, 63, 65  A, B  62GE 0.120050
 26  Taiwan Tao 2  62, 63, 65  A, B  62GE 0.040050
 27  Taiwan Thao 2  62, 63, 65  A, B  62GE 0.310030
 28  USA African American pop 4 2  62, 63, 65  A, B  62GE 0.49002,411
 29  USA African American pop 4 2  62, 63, 65  A, B  62GE 0.50002,411
 30  USA Asian pop 2 2  62, 63, 65  A, B  62GE 0.52001,772
 31  USA Asian pop 2 2  62, 63, 65  A, B  62GE 0.53001,772
 32  USA Hispanic pop 2 2  62, 63, 65  A, B  62GE 0.50001,999
 33  USA Hispanic pop 2 2  62, 63, 65  A, B  62GE 0.51001,999


   

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
Gonzalez-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, Silva AL, Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR and Middleton D Nucleic Acid Research 2015, 39, 28, D784-8.
Liverpool, U.K.

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