Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Cape Verde Northwestern Islands 1  56  A, B  56R 0.370062
 2  Cape Verde Southeastern Islands 1  56  A, B  56R 0.210062
 3  England North West 1  56  A, B  56R 0.0900298
 4  Ghana Ga-Adangbe 1  56  A, B  56R 0.3500131
 5  Guinea Bissau 1  56  A, B  56R 0.140065
 6  Ireland Northern 1  56  A, B  56R 0.04001,000
 7  Ireland South 1  56  A, B  56R 0.0700250
 8  Mexico Oaxaca Mixtec 2  56  A, B  56R 103
 9  Mexico Oaxaca Mixe 2  56  A, B  56R 55
 10  Mexico City Mestizo pop 2 2  56  A, B  56R 234
 11  Philippines Ivatan 2  56  A, B  56R 50
 12  Poland DKMS 2  56  A, B  56R 0.090020,653
 13  Azores Central Islands 1  56  A, B  56R 0.040056
 14  Azores Oriental Islands 1  56  A, B  56R 0.150039
 15  Madeira 1  56  A, B  56R 0.0800185
 16  Portugal Center 1  56  A, B  56R 0.160050
 17  Portugal North 1  56  A, B  56R 0.170046
 18  Portugal South 1  56  A, B  56R 0.180049
 19  Sao Tome Island Angolar 1  56  A, B  56R 0.080012
 20  Sao Tome Island Forro 1  56  A, B  56R 0.200050
 21  Saudi Arabia pop 5 1  56  A, B  56R 0.2500158
 22  Taiwan Rukai 2  56  A, B  56R 0.000050
 23  Taiwan Puyuma 2  56  A, B  56R 0.000050
 24  Taiwan Tao 2  56  A, B  56R 0.000050
 25  Taiwan Thao 2  56  A, B  56R 0.000030
 26  Taiwan Bunun 2  56  A, B  56R 101
 27  Taiwan Ami 2  56  A, B  56R 98
 28  USA African American pop 4 2  56  A, B  56R 0.26002,411
 29  USA African American pop 4 2  56  A, B  56R 0.27002,411
 30  USA Asian pop 2 2  56  A, B  56R 0.10001,772
 31  USA Asian pop 2 2  56  A, B  56R 0.11001,772
 32  USA Hispanic pop 2 2  56  A, B  56R 0.18001,999
 33  USA Hispanic pop 2 2  56  A, B  56R 0.19001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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