Allele Frequencies in World Populations

HLA Epitopes» Epitope Frequency Search » ABC

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THIS A BETA VERSION OF HLA EPITOPE FREQUENCIES DB. NEW POPULATIONS AND FEATURES WILL SOON BE ADDED.

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Notes:

¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
* Distribution - Graphical distribution of the epitope.

Line Population AA Position Loci Epitope Epitope
Frequency
(in_decimals)		 Sample
Size		 Distribution*
 1  Azores Central Islands 1  44, 45, 46  B  44RT 0.520056
 2  Azores Oriental Islands 1  44, 45, 46  B  44RT 0.560039
 3  Cape Verde Northwestern Islands 1  44, 45, 46  B  44RT 0.810062
 4  Cape Verde Southeastern Islands 1  44, 45, 46  B  44RT 0.560062
 5  England North West 1  44, 45, 46  B  44RT 0.3300298
 6  Ghana Ga-Adangbe 1  44, 45, 46  B  44RT 0.7000131
 7  Guinea Bissau 1  44, 45, 46  B  44RT 0.660065
 8  Ireland Northern 1  44, 45, 46  B  44RT 0.27001,000
 9  Ireland South 1  44, 45, 46  B  44RT 0.2700250
 10  Madeira 1  44, 45, 46  B  44RT 0.5400185
 11  Mexico City Mestizo pop 2 2  44, 45, 46  B  44RT 0.5700234
 12  Mexico Oaxaca Mixe 2  44, 45, 46  B  44RT 0.690055
 13  Mexico Oaxaca Mixtec 2  44, 45, 46  B  44RT 0.7800103
 14  Philippines Ivatan 2  44, 45, 46  B  44RT 0.240050
 15  Poland DKMS 2  44, 45, 46  B  44RT 0.460020,653
 16  Portugal Center 1  44, 45, 46  B  44RT 0.660050
 17  Portugal North 1  44, 45, 46  B  44RT 0.520046
 18  Portugal South 1  44, 45, 46  B  44RT 0.690049
 19  Sao Tome Island Angolar 1  44, 45, 46  B  44RT 0.920012
 20  Sao Tome Island Forro 1  44, 45, 46  B  44RT 0.780050
 21  Saudi Arabia pop 5 1  44, 45, 46  B  44RT 0.5600158
 22  Taiwan Ami 2  44, 45, 46  B  44RT 0.000098
 23  Taiwan Bunun 2  44, 45, 46  B  44RT 0.0000101
 24  Taiwan Puyuma 2  44, 45, 46  B  44RT 0.000050
 25  Taiwan Rukai 2  44, 45, 46  B  44RT 0.000050
 26  Taiwan Tao 2  44, 45, 46  B  44RT 0.000050
 27  Taiwan Thao 2  44, 45, 46  B  44RT 0.100030
 28  USA African American pop 4 2  44, 45, 46  B  44RT 0.57002,411
 29  USA African American pop 4 2  44, 45, 46  B  44RT 0.58002,411
 30  USA Asian pop 2 2  44, 45, 46  B  44RT 0.47001,772
 31  USA Asian pop 2 2  44, 45, 46  B  44RT 0.48001,772
 32  USA Hispanic pop 2 2  44, 45, 46  B  44RT 0.54001,999
 33  USA Hispanic pop 2 2  44, 45, 46  B  44RT 0.55001,999


   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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