HLA > Allele Frequency Search > Classical

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Displaying 1 to 33 (from 33) records   Pages: 1 of 1  

Line Allele Population % of individuals
that have the allele
Allele
Frequency
(in_decimals)
Sample
Size
IMGT/HLA¹
Database
Distribution² Haplotype³
Association
Notesª
 1   A*01:01:01  Costa Rica Guanacaste Mestizo (G) 9.2 (*) 0.0460 (*)110See
 2   A*02:01:01  Costa Rica Guanacaste Mestizo (G) 31.8 (*) 0.1680 (*)110See
 3   A*02:01:04  Costa Rica Guanacaste Mestizo (G) 1.0 (*) 0.0050 (*)110See
 4   A*02:02  Costa Rica Guanacaste Mestizo (G) 2.8 (*) 0.0140 (*)110See
 5   A*02:05:01  Costa Rica Guanacaste Mestizo (G) 5.4 (*) 0.0270 (*)110See
 6   A*02:06:01  Costa Rica Guanacaste Mestizo (G) 6.4 (*) 0.0320 (*)110See
 7   A*02:11:01  Costa Rica Guanacaste Mestizo (G) 2.8 (*) 0.0140 (*)110See
 8   A*02:22:01  Costa Rica Guanacaste Mestizo (G) 3.6 (*) 0.0180 (*)110See
 9   A*02:33  Costa Rica Guanacaste Mestizo (G) 1.0 (*) 0.0050 (*)110See
 10   A*03:01:01  Costa Rica Guanacaste Mestizo (G) 8.2 (*) 0.0410 (*)110See
 11   A*11:01:01  Costa Rica Guanacaste Mestizo (G) 6.4 (*) 0.0320 (*)110See
 12   A*23:01:01  Costa Rica Guanacaste Mestizo (G) 7.2 (*) 0.0360 (*)110See
 13   A*24:02:01  Costa Rica Guanacaste Mestizo (G) 28.2 (*) 0.1500 (*)110See
 14   A*25:01:01  Costa Rica Guanacaste Mestizo (G) 1.8 (*) 0.0090 (*)110See
 15   A*26:01:01  Costa Rica Guanacaste Mestizo (G) 3.6 (*) 0.0180 (*)110See
 16   A*29:02:01  Costa Rica Guanacaste Mestizo (G) 8.3 (*) 0.0460 (*)110See
 17   A*30:01:01  Costa Rica Guanacaste Mestizo (G) 3.6 (*) 0.0180 (*)110See
 18   A*30:02:01  Costa Rica Guanacaste Mestizo (G) 12.8 (*) 0.0640 (*)110See
 19   A*30:04:01  Costa Rica Guanacaste Mestizo (G) 1.0 (*) 0.0050 (*)110See
 20   A*31:01:02  Costa Rica Guanacaste Mestizo (G) 6.4 (*) 0.0320 (*)110See
 21   A*32:01:01  Costa Rica Guanacaste Mestizo (G) 4.6 (*) 0.0230 (*)110See
 22   A*33:01:01  Costa Rica Guanacaste Mestizo (G) 2.8 (*) 0.0140 (*)110See
 23   A*33:03:01  Costa Rica Guanacaste Mestizo (G) 4.6 (*) 0.0230 (*)110See
 24   A*34:02:01  Costa Rica Guanacaste Mestizo (G) 8.2 (*) 0.0410 (*)110See
 25   A*36:01  Costa Rica Guanacaste Mestizo (G) 3.6 (*) 0.0180 (*)110See
 26   A*66:01:01  Costa Rica Guanacaste Mestizo (G) 1.8 (*) 0.0090 (*)110See
 27   A*68:01:02  Costa Rica Guanacaste Mestizo (G) 4.6 (*) 0.0230 (*)110See
 28   A*68:02:01  Costa Rica Guanacaste Mestizo (G) 6.4 (*) 0.0320 (*)110See
 29   A*68:03:01  Costa Rica Guanacaste Mestizo (G) 2.8 (*) 0.0140 (*)110See
 30   A*68:05  Costa Rica Guanacaste Mestizo (G) 1.8 (*) 0.0090 (*)110See
 31   A*69:01  Costa Rica Guanacaste Mestizo (G) 1.0 (*) 0.0050 (*)110See
 32   A*74:01  Costa Rica Guanacaste Mestizo (G) 1.8 (*) 0.0090 (*)110See
 33   A*74:23  Costa Rica Guanacaste Mestizo (G) 1.0 (*) 0.0050 (*)110See

Notes:

* Allele Frequency: Total number of copies of the allele in the population sample (Alleles / 2n) in decimal format.
   Important: This field has been expanded to four decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
* % of individuals that have the allele: Percentage of individuals who have the allele in the population (Individuals / n).
* Allele Frequencies shown in green were calculated from Phenotype Frequencies assuming Hardy-Weinberg proportions.
   AF = 1-square_root(1-PF)
   PF = 1-(1-AF)2
   AF = Allele Frequency; PF = Phenotype Frequency, i.e. (%) of the individuals carrying the allele.
* Allele Frequencies marked with (*) were calculated from all alleles in the corresponding G group.

¹ IMGT/HLA Database - For more details of the allele.
² Distribution - Graphical distribution of the allele.
³ Haplotype Association - Find HLA haplotypes with this allele.
ª Notes - See notes for ambiguous combinations of alleles.







   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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