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USA San Francisco Caucasian

Polymorphic Region:

Demographic Data

  Ethnic origin: Caucasoid
  Geographic Region: North America
  Latitude: 37º 46' N
  Longitude: 122º 25' W
  Family: Not Known
  Urban/Rural: Urban

Sample Data

  Sample Size: 220
  Test date: 2011
  Method(s): Sequencing, Other
  Source: Controls for Disease Study
  Loci typed: A, B, C, DPB1, DQA1, DQB1, DRB1, DRB3, DRB4, DRB5
  Additional notes: Tested by NGS To gain further insight into the role of HLA alleles in lymphomagenesis and to investigate the independence of validated SNPs and HLA alleles with follicular lymphoma risk, high-resolution HLA typing was conducted using next-generation sequencing in 222 non-Hispanic White FL cases and 220 matched controls from a larger San Francisco Bay Area population-based case-control study of lymphoma.

Bibliographic Reference

  Author(s): Christine Skibola
  Publication details: Skibola CF, Akers NK, Conde L, Ladner M, Hawbecker SK, Cohen F, Ribas F, Erlich HA, Goodridge D, Trachtenberg EA, Smith MT, Bracci PM. "Multi-locus HLA class I and II allele and haplotype associations with follicular lymphoma". Tissue antigens. 79(4):279-86, 2012.
  Author's e-mail:

Frequency Data

Allele Frequencies Haplotype Frequencies 


Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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