Allele Frequencies in World Populations

HLA » Haplotype Frequency Search

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Line Haplotype Population Frequency (%) Sample Size Location
1B*39:02-C*07:02Mexico Oaxaca Mixe21.205517_5_N_96_45_W
2B*39:02-C*03:04Mexico Oaxaca Mixe17.305517_5_N_96_45_W
3A*31:01-B*39:02-DRB1*16:02Mexico Oaxaca Mixe10.005517_5_N_96_45_W
4A*02:06-B*39:02-DRB1*04:07Mexico Oaxaca Mixe9.005517_5_N_96_45_W
5B*39:02-C*07:02Mexico Oaxaca Zapotec8.009017_5_N_96_45_W
6A*02:01-B*39:02-DRB1*16:02Mexico Oaxaca Mixtec6.0010317_5_N_96_45_W
7A*02:01-B*39:02-DRB1*16:02Mexico Oaxaca Mixe6.005517_5_N_96_45_W
8B*39:02-C*07:02Mexico Oaxaca Mixtec6.0010317_5_N_96_45_W
9B*39:02-C*03:04Mexico Oaxaca Zapotec5.809017_5_N_96_45_W
10A*02:06-B*39:02-DRB1*04:04Mexico Oaxaca Zapotec4.009017_5_N_96_45_W
11A*02:06-B*39:02-DRB1*04:04Mexico Oaxaca Mixe4.005517_5_N_96_45_W
12A*02:06-B*39:02-DRB1*04:03Mexico Oaxaca Mixe3.005517_5_N_96_45_W
13A*31:01-B*39:02-DRB1*16:02Mexico Oaxaca Zapotec3.009017_5_N_96_45_W
14A*24:02-B*39:02-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01Mexico Chichen Itza Maya (prehispanic)2.134720_40_N_88_34_W
15A*02:01:01-B*39:02:01-C*03:02:01-DRB1*04:04:01-DQB1*03:02:01Mexico Hidalgo Mezquital Valley/ Otomi1.397220_28_N_99_13_W
16A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:11:01Costa Rica Guanacaste Mestizo (G)1.3611010_16_N_85_37_W
17A*02:06-B*39:02-C*03:04-DRB1*04:11-DQA1*03:03-DQB1*04:02Mexico Chichen Itza Maya (prehispanic)1.064720_40_N_88_34_W
18A*24:02-B*39:02-C*03:04-DRB1*14:02-DQA1*05:03-DQB1*03:01Mexico Chichen Itza Maya (prehispanic)1.064720_40_N_88_34_W
19A*24:02-B*39:02-C*07:02-DRB1*04:11-DQA1*05:03-DQB1*03:01Mexico Chichen Itza Maya (prehispanic)1.064720_40_N_88_34_W
20A*68:01-B*39:02-C*07:02-DRB1*04:11-DQA1*03:03-DQB1*04:02Mexico Chichen Itza Maya (prehispanic)1.064720_40_N_88_34_W
21B*39:02-C*03:04Mexico Mexico City Mestizo pop 21.0623419_26_N_99_8_W
22A*02:06-B*39:02-DRB1*16:02Mexico Oaxaca Jamiltepec Mixtec1.049616_25_N_97_58_W
23B*39:02-C*07:02Mexico Mexico City Mestizo pop 20.8523419_26_N_99_8_W
24A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:07Costa Rica Amerindians (G)0.841259_34_N_83_25_W
25A*68:03-B*39:02-C*07:02-DRB1*04:03-DQA1*03:01-DQB1*03:02Mexico Tixcacaltuyub Maya0.756720_29_N_88_54_W
26A*68:03-B*39:02-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02Mexico Tixcacaltuyub Maya0.756720_29_N_88_54_W
27A*02:01:01-B*39:02:02-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01Mexico Hidalgo Mezquital Valley/ Otomi0.697220_28_N_99_13_W
28A*68:01:01-B*39:02:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02Mexico Hidalgo Mezquital Valley/ Otomi0.697220_28_N_99_13_W
29A*24:02:01-B*39:02:02-C*03:04:01-DRB1*04:07Nicaragua Mestizo (G)0.6515512_40_N_85_13_W
30A*24:02-B*39:02-DRB1*16:02-DQB1*03:01Mexico Veracruz Xalapa0.608419_32_N_96_55_W
31A*02:01-B*39:02-DRB1*04:11-DQB1*03:02Mexico Chihuahua Chihuahua City Pop 20.578828_48_N_106_26_W
32A*02:01-B*39:02-DRB1*04:10Mexico Oaxaca Jamiltepec Mixtec0.529616_25_N_97_58_W
33A*02:01-B*39:02-DRB1*16:02Mexico Oaxaca Jamiltepec Mixtec0.529616_25_N_97_58_W
34A*24:02-B*39:02-DRB1*14:06Mexico Oaxaca Jamiltepec Mixtec0.529616_25_N_97_58_W
35A*30:01-B*39:02-DRB1*03:01Mexico Oaxaca Jamiltepec Mixtec0.529616_25_N_97_58_W
36A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:07Costa Rica Guanacaste Mestizo (G)0.4511010_16_N_85_37_W
37A*02:01-B*39:02-C*03:04-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPB1*04:02Nicaragua Managua0.4333912_7_N_86_10_W
38A*02:33-B*39:02-C*07:02-DRB1*04:07-DQA1*05:01-DQB1*03:01-DPB1*04:02Nicaragua Managua0.4333912_7_N_86_10_W
39B*39:02-C*03:04-DRB1*04:04-DQB1*03:02Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
40B*39:02-C*03:04-DRB1*04:11-DQB1*03:02Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
41B*39:02-C*07:02-DRB1*08:02-DQB1*04:02Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
42B*39:02-C*07:02-DRB1*16:02-DQB1*03:01Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
43A*02:01-B*39:02-C*03:04-DRB1*04:04-DQB1*03:02Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
44A*02:01-B*39:02-C*03:04-DRB1*04:11-DQB1*03:02Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
45A*68:01-B*39:02-C*07:02-DRB1*16:02-DQB1*03:01Mexico Mexico City Mestizo pop 20.4323419_26_N_99_8_W
46A*02:01:01-B*39:02:02-C*03:04:01-DRB1*11:01:02Costa Rica Amerindians (G)0.421259_34_N_83_25_W
47A*02:01:01-B*39:02:02-C*15:09-DRB1*04:11:01Costa Rica Amerindians (G)0.421259_34_N_83_25_W
48A*02:01-B*39:02-C*07:02-DRB1*04:04-DQB1*03:02Mexico Mexico City Mestizo population0.3514319_25_N_99_7_W
49B*39:02-C*07:02-DRB1*04:04-DQB1*03:02Mexico Mexico City Mestizo population0.3514319_25_N_99_7_W
50A*02:01:01-B*39:02:02-C*02:02:02-DRB1*14:06:01Nicaragua Mestizo (G)0.3215512_40_N_85_13_W
51A*02:06:01-B*39:02:02-C*07:02:01-DRB1*04:07Nicaragua Mestizo (G)0.3215512_40_N_85_13_W
52A*02:33-B*39:02:02-C*07:02:01-DRB1*04:07Nicaragua Mestizo (G)0.3215512_40_N_85_13_W
53A*02:01-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.3033019_25_N_99_8_W
54A*24:02-B*39:02-DRB1*14:06-DQB1*03:01Mexico Mexico City Tlalpan0.3033019_25_N_99_8_W
55A*31:01-B*39:02-C*03:04-DRB1*14:01-DQA1*01:01-DQB1*03:02-DPB1*02:01USA San Diego0.2649632_50_N_117_15_W
56A*31:01-B*39:02-C*03:04-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPA1*01:03-DPB1*04:02Mexico Chiapas Lacandon Mayans0.2321816_54_N_92_5_W
57A*68:05-B*39:02-C*03:04-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*02:01Mexico Chiapas Lacandon Mayans0.2321816_54_N_92_5_W
58B*39:02-C*07:02USA Hispanic pop 20.221,99944_58_N_93_15_W
59A*02:01-B*39:02-C*03:04-DRB1*16:01-DQA1*01:02-DQB1*03:02-DPB1*03:01Nicaragua Managua0.2233912_7_N_86_10_W
60A*74:01-B*39:02-C*03:04-DRB1*13:04-DQA1*01:02-DQB1*06:02-DPB1*04:01Nicaragua Managua0.2233912_7_N_86_10_W
61A*11:01:01-B*39:02:02-C*04:01:01-DRB1*01:01:01-DQB1*05:01:01-DPA1*01:03:01-DPB1*03:01:01Brazil Rio de Janeiro Caucasian0.1952122_54_S_43_12_W
62A*68:01:02-B*39:02:02-C*03:04:01-DRB1*08:04:01-DQB1*04:02:01-DPA1*01:03:01-DPB1*04:02:01Brazil Rio de Janeiro Caucasian0.1952122_54_S_43_12_W
63A*31:01-B*39:02-C*05:01-DRB1*15:01-DQB1*06:02-DPB1*04:01Panama0.194628_59_N_79_37_W
64B*39:02-C*03:04USA Hispanic pop 20.181,99944_58_N_93_15_W
65A*01:01-B*39:02-DRB1*04:11-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
66A*01:01-B*39:02-DRB1*13:02-DQB1*06:04Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
67A*02:01-B*39:02-DRB1*04:05-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
68A*02:01-B*39:02-DRB1*16:02-DQB1*03:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
69A*02:02-B*39:02-DRB1*04:02-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
70A*24:02-B*39:02-DRB1*03:01-DQB1*02:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
71A*24:02-B*39:02-DRB1*04:01-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
72A*24:02-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
73A*25:01-B*39:02-DRB1*07:01-DQB1*02:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
74A*31:01-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
75A*33:01-B*39:02-DRB1*01:02-DQB1*05:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
76A*34:04-B*39:02-DRB1*01:02-DQB1*05:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
77A*36-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
78A*68:01-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
79A*68:01-B*39:02-DRB1*14:02-DQB1*03:01Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
80A*68:03-B*39:02-DRB1*04:07-DQB1*03:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
81A*68:05-B*39:02-DRB1*08:02-DQB1*04:02Mexico Mexico City Tlalpan0.1533019_25_N_99_8_W
82A*68:01-B*39:02USA Hispanic pop 20.141,99944_58_N_93_15_W
83A*68:03-B*39:02USA Hispanic pop 20.101,99944_58_N_93_15_W
84A*31:01-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01Japan pop 170.103,07837_36_N_138_2_E
85A*02:06-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01Japan pop 170.073,07837_36_N_138_2_E
86A*24:02-B*39:02-C*07:02-DRB1*04:03-DQA1*03:01-DQB1*03:02-DPA1*02:01-DPB1*05:01Japan pop 170.073,07837_36_N_138_2_E
87A*31:01-B*39:02-C*07:02-DRB1*14:54-DQA1*01:04-DQB1*05:03-DPA1*02:02-DPB1*05:01Japan pop 170.073,07837_36_N_138_2_E
88A*02:01-B*39:02-C*07:02-DRB1*14:54Japan pop 160.0718,60435_41_N_139_46_E
89A*31:01-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0618,60435_41_N_139_46_E
90A*02:06-B*39:02-C*03:04-DRB1*04:07-DQB1*03:02USA Hispanic pop 20.051,99944_58_N_93_15_W
91A*02:06-B*39:02-C*03:04-DRB1*04:11-DQB1*04:02USA Hispanic pop 20.051,99944_58_N_93_15_W
92A*68:01-B*39:02-C*03:04-DRB1*04:07-DQB1*03:02USA Hispanic pop 20.051,99944_58_N_93_15_W
93A*68:01-B*39:02-C*07:02-DRB1*04:04-DQB1*03:02USA Hispanic pop 20.051,99944_58_N_93_15_W
94A*31:01-B*39:02USA Hispanic pop 20.041,99944_58_N_93_15_W
95A*02:06-B*39:02USA Hispanic pop 20.041,99944_58_N_93_15_W
96A*02:04-B*39:02-C*07:02-DRB1*16:02-DQB1*03:01Colombia Bogotá Cord Blood0.031,4634_39_N_73_52_W
97A*02:01-B*39:02USA Hispanic pop 20.031,99944_58_N_93_15_W
98A*02:01-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01Japan pop 170.033,07837_36_N_138_2_E
99A*26:01-B*39:02-C*07:02-DRB1*14:54-DQA1*01:04-DQB1*05:02-DPA1*02:02-DPB1*03:01Japan pop 170.033,07837_36_N_138_2_E
100A*02:06-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0318,60435_41_N_139_46_E
101A*32:01-B*39:02USA Hispanic pop 20.031,99944_58_N_93_15_W
102A*24:02-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0218,60435_41_N_139_46_E
103A*02:01-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0218,60435_41_N_139_46_E
104A*02:01-B*39:02-C*07:02-DRB1*14:06Japan pop 160.0218,60435_41_N_139_46_E
105A*24:02-B*39:02-C*07:02-DRB1*04:03Japan pop 160.0218,60435_41_N_139_46_E
106A*31:01-B*39:02-C*07:02-DRB1*14:54Japan pop 160.0218,60435_41_N_139_46_E
107A*26:03-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0118,60435_41_N_139_46_E
108A*31:01-B*39:02-C*07:02-DRB1*01:01Japan pop 160.0118,60435_41_N_139_46_E
109A*02:07-B*39:02-C*07:02-DRB1*04:05Japan pop 160.0118,60435_41_N_139_46_E
110A*02:07-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0118,60435_41_N_139_46_E
111A*11:01-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0118,60435_41_N_139_46_E
112A*24:02-B*39:02-C*07:02-DRB1*14:54Japan pop 160.0118,60435_41_N_139_46_E
113A*26:01-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0118,60435_41_N_139_46_E
114A*26:01-B*39:02-C*07:02-DRB1*14:54Japan pop 160.0118,60435_41_N_139_46_E
115A*31:01-B*39:02-C*07:02-DRB1*04:05Japan pop 160.0118,60435_41_N_139_46_E
116A*31:01-B*39:02-C*07:02-DRB1*12:01Japan pop 160.0118,60435_41_N_139_46_E
117A*31:01-B*39:02-C*07:02-DRB1*15:01Japan pop 160.0118,60435_41_N_139_46_E
118A*33:03-B*39:02-C*07:02-DRB1*09:01Japan pop 160.0118,60435_41_N_139_46_E
119A*02:17-B*39:02-DRB1*11:04Israel USSR Jews0.0045,68132_9_N_34_50_E
120A*03:02-B*39:02-DRB1*11:01Israel USSR Jews0.0045,68132_9_N_34_50_E
121A*03:01-B*39:02-C*12:03-DRB1*11:01Poland DKMS0.0020,65352_8_N_19_23_E
122A*01:17-B*39:02-DRB1*16:01Israel USSR Jews0.0045,68132_9_N_34_50_E
123A*01:36-B*39:02-DRB1*16:01Israel USSR Jews0.0045,68132_9_N_34_50_E
124A*02:01-B*39:02-DRB1*16:01Israel USSR Jews0.0045,68132_9_N_34_50_E
125A*02:17-B*39:02-DRB1*04:04Israel USSR Jews0.0045,68132_9_N_34_50_E
126A*02:17-B*39:02-DRB1*11:01Israel USSR Jews0.0045,68132_9_N_34_50_E
127A*02:17-B*39:02-DRB1*13:01Israel USSR Jews0.0045,68132_9_N_34_50_E
128A*24:04-B*39:02-DRB1*04:04Israel USSR Jews0.0045,68132_9_N_34_50_E
129A*25:01-B*39:02-DRB1*16:01Israel USSR Jews0.0045,68132_9_N_34_50_E
130A*26:02-B*39:02-DRB1*04:04Israel USSR Jews0.0045,68132_9_N_34_50_E
131A*31:02-B*39:02-DRB1*04:04Israel USSR Jews0.0045,68132_9_N_34_50_E
132A*68:01-B*39:02-DRB1*04:02Israel USSR Jews0.0045,68132_9_N_34_50_E
133A*01:17-B*39:02-DRB1*13:01Israel USSR Jews0.0045,68132_9_N_34_50_E
134A*01:36-B*39:02-DRB1*13:01Israel USSR Jews0.0045,68132_9_N_34_50_E
135A*03:02-B*39:02-DRB1*04:02Israel USSR Jews0.0045,68132_9_N_34_50_E
136A*03:02-B*39:02-DRB1*04:04Israel USSR Jews0.0045,68132_9_N_34_50_E



   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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