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HLA Epitopes» Epitope Frequency Search » ABC
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Notes:
¹ Epitope frequencies were calculated using raw genotyping data.
² Epitope frequencies were calculated using haplotype frequencies.
| Line | Population | AA Position | Loci | Epitope | Epitope Frequency (in_decimals) |
Sample Size |
Location |
|---|---|---|---|---|---|---|---|
| 1 | Azores Central Islands1 | 62, 63, 65, 66 | A, B | 62QE | 0.5200 | 56 | 38_0_N_28_0_W |
| 2 | Azores Oriental Islands1 | 62, 63, 65, 66 | A, B | 62QE | 0.6400 | 39 | 36_58_N_25_6_W |
| 3 | Cape Verde Northwestern Islands1 | 62, 63, 65, 66 | A, B | 62QE | 0.7300 | 62 | 16_0_N_24_0_W |
| 4 | Cape Verde Southeastern Islands1 | 62, 63, 65, 66 | A, B | 62QE | 0.5300 | 62 | 16_0_N_24_0_W |
| 5 | England North West1 | 62, 63, 65, 66 | A, B | 62QE | 0.7500 | 298 | 53_0_N_3_0_W |
| 6 | Ghana Ga-Adangbe1 | 62, 63, 65, 66 | A, B | 62QE | 0.5800 | 131 | 5_45_N_0_12_E |
| 7 | Guinea Bissau1 | 62, 63, 65, 66 | A, B | 62QE | 0.4900 | 65 | 12_0_N_15_0_W |
| 8 | Ireland Northern1 | 62, 63, 65, 66 | A, B | 62QE | 0.7200 | 1,000 | 54_40_N_6_45_W |
| 9 | Ireland South1 | 62, 63, 65, 66 | A, B | 62QE | 0.7800 | 250 | 53_20_N_6_15_W |
| 10 | Madeira1 | 62, 63, 65, 66 | A, B | 62QE | 0.4900 | 185 | 32_44_N_16_58_W |
| 11 | Mexico City Mestizo pop 22 | 62, 63, 65, 66 | A, B | 62QE | 234 | 19_26_N_99_8_W | |
| 12 | Mexico Oaxaca Mixe2 | 62, 63, 65, 66 | A, B | 62QE | 55 | 17_5_N_96_45_W | |
| 13 | Mexico Oaxaca Mixtec2 | 62, 63, 65, 66 | A, B | 62QE | 103 | 17_5_N_96_45_W | |
| 14 | Philippines Ivatan2 | 62, 63, 65, 66 | A, B | 62QE | 50 | 20_22_N_121_56_E | |
| 15 | Poland DKMS2 | 62, 63, 65, 66 | A, B | 62QE | 0.6500 | 20,653 | 52_8_N_19_23_E |
| 16 | Portugal Center1 | 62, 63, 65, 66 | A, B | 62QE | 0.6600 | 50 | 39_0_N_8_0_W |
| 17 | Portugal North1 | 62, 63, 65, 66 | A, B | 62QE | 0.5400 | 46 | 41_0_N_8_0_W |
| 18 | Portugal South1 | 62, 63, 65, 66 | A, B | 62QE | 0.5900 | 49 | 37_0_N_8_0_W |
| 19 | Sao Tome Island Angolar1 | 62, 63, 65, 66 | A, B | 62QE | 0.4200 | 12 | 0_20_N_6_44_E |
| 20 | Sao Tome Island Forro1 | 62, 63, 65, 66 | A, B | 62QE | 0.4600 | 50 | 0_20_N_6_44_E |
| 21 | Saudi Arabia pop 51 | 62, 63, 65, 66 | A, B | 62QE | 0.5000 | 158 | 24_38_N_46_43_E |
| 22 | Taiwan Ami2 | 62, 63, 65, 66 | A, B | 62QE | 98 | 23_0_N_121_0_E | |
| 23 | Taiwan Bunun2 | 62, 63, 65, 66 | A, B | 62QE | 101 | 23_46_N_121_0_E | |
| 24 | Taiwan Puyuma2 | 62, 63, 65, 66 | A, B | 62QE | 0.1700 | 50 | 23_0_N_121_0_E |
| 25 | Taiwan Rukai2 | 62, 63, 65, 66 | A, B | 62QE | 0.0800 | 50 | 23_0_N_121_0_E |
| 26 | Taiwan Tao2 | 62, 63, 65, 66 | A, B | 62QE | 0.6300 | 50 | 24_0_N_121_0_E |
| 27 | Taiwan Thao2 | 62, 63, 65, 66 | A, B | 62QE | 0.3900 | 30 | 24_0_N_121_0_E |
| 28 | USA African American pop 42 | 62, 63, 65, 66 | A, B | 62QE | 0.6200 | 2,411 | 44_58_N_93_15_W |
| 29 | USA Asian pop 22 | 62, 63, 65, 66 | A, B | 62QE | 0.5800 | 1,772 | 44_58_N_93_15_W |
| 30 | USA Hispanic pop 22 | 62, 63, 65, 66 | A, B | 62QE | 0.5800 | 1,999 | 44_58_N_93_15_W |
| 31 | USA Hispanic pop 22 | 62, 63, 65, 66 | A, B | 62QE | 0.5600 | 1,999 | 44_58_N_93_15_W |
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.
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