HLA > Allele Frequency Search > Classical

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Displaying 1 to 28 (from 28) records   Pages: 1 of 1  

Line Allele Population % of individuals
that have the allele
Allele
Frequency
(in_decimals)
Sample
Size
IMGT/HLA¹
Database
Distribution² Haplotype³
Association
Notesª
 1   B*39  India Kerala Adiya  0.024021See
 2   B*39  India Kerala Hindu Ezhava  0.042024See
 3   B*39  India Kerala Hindu Nair  0.024041See
 4   B*39  India Kerala Hindu Namboothiri  0.013040See
 5   B*39  India Kerala Hindu Pulaya  0.031016See
 6   B*39  India Kerala Kanikkar  022See
 7   B*39  India Kerala Kattunaikka  017See
 8   B*39  India Kerala Kurichiya  010See
 9   B*39  India Kerala Kuruma  015See
 10   B*39  India Kerala Malabar Muslim  034See
 11   B*39  India Kerala Malapandaram  010See
 12   B*39  India Kerala Paniya  010See
 13   B*39  India Kerala Syrian Christian  031See
 14   B*39  India North Gujarat 0.6 0.0030338See
 15   B*39  India North pop 3  0.0080587See
 16   B*39  India sub-Himalayan West Bengal Kami 0.6 0.0032158See
 17   B*39:01  India Andhra Pradesh Golla  0.0100111See
 18   B*39:01  India Delhi pop 2 1.1 0.005090See
 19   B*39:01  India Tamil Nadu  0.00722,492See
 20   B*39:01  India UCBB_Central Indian HLA 0.8 0.00394,204See
 21   B*39:01:01  India Andhra Pradesh Telugu Speaking 2.7 0.0134186See
 22   B*39:01:01  India Karnataka Kannada Speaking 2.9 0.0140174See
 23   B*39:01:01  India Kerala Malayalam speaking 3.7 0.0200356See
 24   B*39:06  India Andhra Pradesh Golla  0.0050111See
 25   B*39:06  India Tamil Nadu  0.00062,492See
 26   B*39:06  India UCBB_Central Indian HLA 0.1 0.00064,204See
 27   B*39:06:02  India Kerala Malayalam speaking 0.3 0.0010356See
 28   B*39:10:01  India Kerala Malayalam speaking 0.3 0.0010356See

Notes:

* Allele Frequency: Total number of copies of the allele in the population sample (Alleles / 2n) in decimal format.
   Important: This field has been expanded to four decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
* % of individuals that have the allele: Percentage of individuals who have the allele in the population (Individuals / n).
* Allele Frequencies shown in green were calculated from Phenotype Frequencies assuming Hardy-Weinberg proportions.
   AF = 1-square_root(1-PF)
   PF = 1-(1-AF)2
   AF = Allele Frequency; PF = Phenotype Frequency, i.e. (%) of the individuals carrying the allele.
* Allele Frequencies marked with (*) were calculated from all alleles in the corresponding G group.

¹ IMGT/HLA Database - For more details of the allele.
² Distribution - Graphical distribution of the allele.
³ Haplotype Association - Find HLA haplotypes with this allele.
ª Notes - See notes for ambiguous combinations of alleles.







   

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
Gonzalez-Galarza FF, McCabe A, Santos EJ, Jones J, Takeshita LY, Ortega-Rivera ND, Del Cid-Pavon GM, Ramsbottom K, Ghattaoraya GS, Alfirevic A, Middleton D and Jones AR Nucleic Acid Research 2020, 48:D783-8.
Liverpool, U.K.

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