Line |
Haplotype |
Population |
Frequency (%) |
Sample Size |
Distribution¹ |
1 | B*39:02-C*07:02 | | Mexico Oaxaca Mixe | 21.2000 | | 55 |
|
2 | B*39:02-C*03:04 | | Mexico Oaxaca Mixe | 17.3000 | | 55 |
|
3 | A*31:01-B*39:02-DRB1*16:02 | | Mexico Oaxaca Mixe | 10.0000 | | 55 |
|
4 | A*02:06-B*39:02-DRB1*04:07 | | Mexico Oaxaca Mixe | 9.0000 | | 55 |
|
5 | B*39:02-C*07:02 | | Mexico Oaxaca Zapotec | 8.0000 | | 90 |
|
6 | A*02:01-B*39:02-DRB1*16:02 | | Mexico Oaxaca Mixtec | 6.0000 | | 103 |
|
7 | A*02:01-B*39:02-DRB1*16:02 | | Mexico Oaxaca Mixe | 6.0000 | | 55 |
|
8 | B*39:02-C*07:02 | | Mexico Oaxaca Mixtec | 6.0000 | | 103 |
|
9 | B*39:02-C*03:04 | | Mexico Oaxaca Zapotec | 5.8000 | | 90 |
|
10 | A*02:06-B*39:02-DRB1*04:04 | | Mexico Oaxaca Mixe | 4.0000 | | 55 |
|
11 | A*02:06-B*39:02-DRB1*04:04 | | Mexico Oaxaca Zapotec | 4.0000 | | 90 |
|
12 | A*02:06-B*39:02-DRB1*04:03 | | Mexico Oaxaca Mixe | 3.0000 | | 55 |
|
13 | A*31:01-B*39:02-DRB1*16:02 | | Mexico Oaxaca Zapotec | 3.0000 | | 90 |
|
14 | A*24:02-B*39:02-C*07:02-DRB1*16:02-DQA1*05:05-DQB1*03:01 | | Mexico Chichen Itza Maya (prehispanic) | 2.1277 | | 47 |
|
15 | A*02:01:01-B*39:02:01-C*03:02:01-DRB1*04:04:01-DQB1*03:02:01 | | Mexico Hidalgo Mezquital Valley/ Otomi | 1.3889 | | 72 |
|
16 | A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:11:01 | | Costa Rica Guanacaste Mestizo (G) | 1.3636 | | 110 |
|
17 | A*02:06-B*39:02-C*03:04-DRB1*04:11-DQA1*03:03-DQB1*04:02 | | Mexico Chichen Itza Maya (prehispanic) | 1.0638 | | 47 |
|
18 | A*24:02-B*39:02-C*03:04-DRB1*14:02-DQA1*05:03-DQB1*03:01 | | Mexico Chichen Itza Maya (prehispanic) | 1.0638 | | 47 |
|
19 | A*24:02-B*39:02-C*07:02-DRB1*04:11-DQA1*05:03-DQB1*03:01 | | Mexico Chichen Itza Maya (prehispanic) | 1.0638 | | 47 |
|
20 | A*68:01-B*39:02-C*07:02-DRB1*04:11-DQA1*03:03-DQB1*04:02 | | Mexico Chichen Itza Maya (prehispanic) | 1.0638 | | 47 |
|
21 | B*39:02-C*03:04 | | Mexico Mexico City Mestizo pop 2 | 1.0600 | | 234 |
|
22 | A*02:06-B*39:02-DRB1*16:02 | | Mexico Oaxaca Jamiltepec Mixtec | 1.0400 | | 96 |
|
23 | B*39:02-C*07:02 | | Mexico Mexico City Mestizo pop 2 | 0.8500 | | 234 |
|
24 | A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:07 | | Costa Rica Amerindians (G) | 0.8431 | | 125 |
|
25 | A*68:03-B*39:02-C*07:02-DRB1*04:03-DQA1*03:01-DQB1*03:02 | | Mexico Tixcacaltuyub Maya | 0.7463 | | 67 |
|
26 | A*68:03-B*39:02-C*07:02-DRB1*04:07-DQA1*03:01-DQB1*03:02 | | Mexico Tixcacaltuyub Maya | 0.7463 | | 67 |
|
27 | A*02:01:01-B*39:02:02-C*07:01:01-DRB1*04:07:01-DQB1*03:02:01 | | Mexico Hidalgo Mezquital Valley/ Otomi | 0.6944 | | 72 |
|
28 | A*68:01:01-B*39:02:01-C*07:01:01-DRB1*08:02:01-DQB1*04:02 | | Mexico Hidalgo Mezquital Valley/ Otomi | 0.6944 | | 72 |
|
29 | A*24:02:01-B*39:02:02-C*03:04:01-DRB1*04:07 | | Nicaragua Mestizo (G) | 0.6452 | | 155 |
|
30 | A*24:02-B*39:02-DRB1*16:02-DQB1*03:01 | | Mexico Veracruz Xalapa | 0.5952 | | 84 |
|
31 | A*02:01-B*39:02-DRB1*04:11-DQB1*03:02 | | Mexico Chihuahua Chihuahua City Pop 2 | 0.5682 | | 88 |
|
32 | A*02:01-B*39:02-DRB1*04:10 | | Mexico Oaxaca Jamiltepec Mixtec | 0.5200 | | 96 |
|
33 | A*02:01-B*39:02-DRB1*16:02 | | Mexico Oaxaca Jamiltepec Mixtec | 0.5200 | | 96 |
|
34 | A*24:02-B*39:02-DRB1*14:06 | | Mexico Oaxaca Jamiltepec Mixtec | 0.5200 | | 96 |
|
35 | A*30:01-B*39:02-DRB1*03:01 | | Mexico Oaxaca Jamiltepec Mixtec | 0.5200 | | 96 |
|
36 | A*02:01:01-B*39:02:02-C*03:04:01-DRB1*04:07 | | Costa Rica Guanacaste Mestizo (G) | 0.4545 | | 110 |
|
37 | A*02:01-B*39:02-C*03:04-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPB1*04:02 | | Nicaragua Managua | 0.4329 | | 339 |
|
38 | A*02:33-B*39:02-C*07:02-DRB1*04:07-DQA1*05:01-DQB1*03:01-DPB1*04:02 | | Nicaragua Managua | 0.4329 | | 339 |
|
39 | B*39:02-C*03:04-DRB1*04:04-DQB1*03:02 | | Mexico Mexico City Mestizo pop 2 | 0.4300 | | 234 |
|
40 | B*39:02-C*03:04-DRB1*04:11-DQB1*03:02 | | Mexico Mexico City Mestizo pop 2 | 0.4300 | | 234 |
|
41 | B*39:02-C*07:02-DRB1*08:02-DQB1*04:02 | | Mexico Mexico City Mestizo pop 2 | 0.4300 | | 234 |
|
42 | B*39:02-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.4300 | | 234 |
|
43 | A*02:01-B*39:02-C*03:04-DRB1*04:04-DQB1*03:02 | | Mexico Mexico City Mestizo pop 2 | 0.4274 | | 234 |
|
44 | A*02:01-B*39:02-C*03:04-DRB1*04:11-DQB1*03:02 | | Mexico Mexico City Mestizo pop 2 | 0.4274 | | 234 |
|
45 | A*68:01-B*39:02-C*07:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Mestizo pop 2 | 0.4274 | | 234 |
|
46 | A*02:01:01-B*39:02:02-C*03:04:01-DRB1*11:01:02 | | Costa Rica Amerindians (G) | 0.4216 | | 125 |
|
47 | A*02:01:01-B*39:02:02-C*15:09-DRB1*04:11:01 | | Costa Rica Amerindians (G) | 0.4216 | | 125 |
|
48 | A*02:01-B*39:02-C*07:02-DRB1*04:04-DQB1*03:02 | | Mexico Mexico City Mestizo population | 0.3497 | | 143 |
|
49 | B*39:02-C*07:02-DRB1*04:04-DQB1*03:02 | | Mexico Mexico City Mestizo population | 0.3497 | | 143 |
|
50 | A*02:01:01-B*39:02:02-C*02:02:02-DRB1*14:06:01 | | Nicaragua Mestizo (G) | 0.3226 | | 155 |
|
51 | A*02:06:01-B*39:02:02-C*07:02:01-DRB1*04:07 | | Nicaragua Mestizo (G) | 0.3226 | | 155 |
|
52 | A*02:33-B*39:02:02-C*07:02:01-DRB1*04:07 | | Nicaragua Mestizo (G) | 0.3226 | | 155 |
|
53 | A*02:01-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.3030 | | 330 |
|
54 | A*24:02-B*39:02-DRB1*14:06-DQB1*03:01 | | Mexico Mexico City Tlalpan | 0.3030 | | 330 |
|
55 | A*31:01-B*39:02-C*03:04-DRB1*14:01-DQA1*01:01-DQB1*03:02-DPB1*02:01 | | USA San Diego | 0.2600 | | 496 |
|
56 | A*31:01-B*39:02-C*03:04-DRB1*04:07-DQA1*03:01-DQB1*03:02-DPA1*01:03-DPB1*04:02 | | Mexico Chiapas Lacandon Mayans | 0.2294 | | 218 |
|
57 | A*68:05-B*39:02-C*03:04-DRB1*08:02-DQA1*04:01-DQB1*04:02-DPA1*01:03-DPB1*02:01 | | Mexico Chiapas Lacandon Mayans | 0.2294 | | 218 |
|
58 | B*39:02-C*07:02 | | USA Hispanic pop 2 | 0.2190 | | 1,999 |
|
59 | A*02:01-B*39:02-C*03:04-DRB1*16:01-DQA1*01:02-DQB1*03:02-DPB1*03:01 | | Nicaragua Managua | 0.2165 | | 339 |
|
60 | A*74:01-B*39:02-C*03:04-DRB1*13:04-DQA1*01:02-DQB1*06:02-DPB1*04:01 | | Nicaragua Managua | 0.2165 | | 339 |
|
61 | A*11:01:01-B*39:02:02-C*04:01:01-DRB1*01:01:01-DQB1*05:01:01-DPA1*01:03:01-DPB1*03:01:01 | | Brazil Rio de Janeiro Caucasian | 0.1946 | | 521 |
|
62 | A*68:01:02-B*39:02:02-C*03:04:01-DRB1*08:04:01-DQB1*04:02:01-DPA1*01:03:01-DPB1*04:02:01 | | Brazil Rio de Janeiro Caucasian | 0.1946 | | 521 |
|
63 | A*31:01-B*39:02-C*05:01-DRB1*15:01-DQB1*06:02-DPB1*04:01 | | Panama | 0.1900 | | 462 |
|
64 | B*39:02-C*03:04 | | USA Hispanic pop 2 | 0.1830 | | 1,999 |
|
65 | A*01:01-B*39:02-DRB1*04:11-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
66 | A*01:01-B*39:02-DRB1*13:02-DQB1*06:04 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
67 | A*02:01-B*39:02-DRB1*04:05-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
68 | A*02:01-B*39:02-DRB1*16:02-DQB1*03:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
69 | A*02:02-B*39:02-DRB1*04:02-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
70 | A*24:02-B*39:02-DRB1*03:01-DQB1*02:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
71 | A*24:02-B*39:02-DRB1*04:01-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
72 | A*24:02-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
73 | A*25:01-B*39:02-DRB1*07:01-DQB1*02:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
74 | A*31:01-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
75 | A*33:01-B*39:02-DRB1*01:02-DQB1*05:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
76 | A*34:04-B*39:02-DRB1*01:02-DQB1*05:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
77 | A*36-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
78 | A*68:01-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
79 | A*68:01-B*39:02-DRB1*14:02-DQB1*03:01 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
80 | A*68:03-B*39:02-DRB1*04:07-DQB1*03:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
81 | A*68:05-B*39:02-DRB1*08:02-DQB1*04:02 | | Mexico Mexico City Tlalpan | 0.1515 | | 330 |
|
82 | A*68:01-B*39:02 | | USA Hispanic pop 2 | 0.1390 | | 1,999 |
|
83 | A*68:03-B*39:02 | | USA Hispanic pop 2 | 0.1010 | | 1,999 |
|
84 | A*31:01-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01 | | Japan pop 17 | 0.1000 | | 3,078 |
|
85 | A*02:06-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01 | | Japan pop 17 | 0.0700 | | 3,078 |
|
86 | A*24:02-B*39:02-C*07:02-DRB1*04:03-DQA1*03:01-DQB1*03:02-DPA1*02:01-DPB1*05:01 | | Japan pop 17 | 0.0700 | | 3,078 |
|
87 | A*31:01-B*39:02-C*07:02-DRB1*14:54-DQA1*01:04-DQB1*05:03-DPA1*02:02-DPB1*05:01 | | Japan pop 17 | 0.0700 | | 3,078 |
|
88 | A*02:01-B*39:02-C*07:02-DRB1*14:54 | | Japan pop 16 | 0.0680 | | 18,604 |
|
89 | A*31:01-B*39:02-C*07:02-DRB1*09:01 | | Japan pop 16 | 0.0570 | | 18,604 |
|
90 | A*02:06-B*39:02-C*03:04-DRB1*04:07-DQB1*03:02 | | USA Hispanic pop 2 | 0.0470 | | 1,999 |
|
91 | A*02:06-B*39:02-C*03:04-DRB1*04:11-DQB1*04:02 | | USA Hispanic pop 2 | 0.0470 | | 1,999 |
|
92 | A*68:01-B*39:02-C*03:04-DRB1*04:07-DQB1*03:02 | | USA Hispanic pop 2 | 0.0470 | | 1,999 |
|
93 | A*68:01-B*39:02-C*07:02-DRB1*04:04-DQB1*03:02 | | USA Hispanic pop 2 | 0.0470 | | 1,999 |
|
94 | A*31:01-B*39:02 | | USA Hispanic pop 2 | 0.0430 | | 1,999 |
|
95 | A*02:06-B*39:02 | | USA Hispanic pop 2 | 0.0380 | | 1,999 |
|
96 | A*02:04-B*39:02-C*07:02-DRB1*16:02-DQB1*03:01 | | Colombia Bogotá Cord Blood | 0.0342 | | 1,463 |
|
97 | A*02:01-B*39:02 | | USA Hispanic pop 2 | 0.0320 | | 1,999 |
|
98 | A*02:01-B*39:02-C*07:02-DRB1*09:01-DQA1*03:02-DQB1*03:03-DPA1*01:03-DPB1*02:01 | | Japan pop 17 | 0.0300 | | 3,078 |
|
99 | A*26:01-B*39:02-C*07:02-DRB1*14:54-DQA1*01:04-DQB1*05:02-DPA1*02:02-DPB1*03:01 | | Japan pop 17 | 0.0300 | | 3,078 |
|
100 | A*02:06-B*39:02-C*07:02-DRB1*09:01 | | Japan pop 16 | 0.0260 | | 18,604 |
|
* Haplotype Frequencies: Total number of copies of the haplotype in the population sample (Haplotypes / 2n) shown in percentages (%).
: This field has been expanded to two decimals to better represent frequencies of large datasets (e.g. where sample size > 1000 individuals)
¹ Distribution - Shows the geographic distribution in overlaid maps of the complete haplotype (left icon) or the input alleles if low level resolution was entered (right icon).